Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023482.1 Corchorus olitorius cultivar O-4 contig23515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2869
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:997 original size:9 final size:8

Alignment explanation


    Indices: 970--1004  Score: 54
    Period size: 8  Copynumber: 4.4  Consensus size: 8

        960 AGTCAAAGAA

                    
        970 GCCCAAG-
          1 GCCCAAGT

                    
        977 GCCCAAGT
          1 GCCCAAGT

                     
        985 GCCCAATGT
          1 GCCCAA-GT

                    
        994 GCCCAAGT
          1 GCCCAAGT

               
       1002 GCC
          1 GCC

       1005 ATGTCAAAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   7    7  0.27
   8   11  0.42
   9    8  0.31

ACGTcount: A:0.23, C:0.40, G:0.26, T:0.11


Consensus pattern (8 bp):   
GCCCAAGT
Done.