Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023484.1 Corchorus olitorius cultivar O-4 contig23517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7481
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:2929 original size:22 final size:22

Alignment explanation


    Indices: 2885--2934  Score: 57
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       2875 AAATATTACC

                         *  ***   
       2885 ATAATTATTTTTGGCAGCCATA
          1 ATAATTATTTTTGCCAAAAATA

                                  
       2907 ATAATTATTTTTGCCAAAAATA
          1 ATAATTATTTTTGCCAAAAATA

                   
       2929 A-AATTA
          1 ATAATTA

       2935 GGCAATAATT


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  21    5  0.21
  22   19  0.79

ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40


Consensus pattern (22 bp):   
ATAATTATTTTTGCCAAAAATA
Done.