Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002349.1 Corchorus olitorius cultivar O-4 contig02349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:675 original size:20 final size:20

Alignment explanation


    Indices: 650--689  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        640 GAGTCAAATT

                                
        650 AATAAAAGCAAGTCAATGAG
          1 AATAAAAGCAAGTCAATGAG

                                
        670 AATAAAAGCAAGTCAATGAG
          1 AATAAAAGCAAGTCAATGAG

        690 CAAGACAGTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.55, C:0.10, G:0.20, T:0.15


Consensus pattern (20 bp):   
AATAAAAGCAAGTCAATGAG
Done.