Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023490.1 Corchorus olitorius cultivar O-4 contig23523, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1710
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30


Found at i:282 original size:18 final size:18

Alignment explanation


    Indices: 242--282  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        232 TATTATCCCG

                             *
        242 ATTATTCACATTGTTCAG
          1 ATTATTCACATTGTTCAA

            *      *          
        260 GTTATTCGCATTGTTCAA
          1 ATTATTCACATTGTTCAA

                 
        278 ATTAT
          1 ATTAT

        283 CTCCCATCGC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46


Consensus pattern (18 bp):   
ATTATTCACATTGTTCAA
Done.