Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023491.1 Corchorus olitorius cultivar O-4 contig23524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13623

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
520--562
22
2.0
22
85
0
59
34
18
4
41
1.71
608--1089
22
22.0
22
69
14
153
35
16
10
37
1.83
1193--1319
22
5.8
22
71
13
91
30
12
11
45
1.77
1215--1424
22
9.6
21
73
8
102
32
13
10
43
1.78
1461--1608
22
6.7
22
74
14
108
37
17
9
35
1.82
1461--1608
66
2.2
66
77
11
151
37
17
9
35
1.82
1461--1837
44
8.8
44
70
12
187
37
16
9
36
1.81
1626--1847
66
3.3
66
83
2
176
39
16
9
34
1.81
1694--1848
22
7.0
22
75
8
145
36
17
10
35
1.85
1675--1848
66
2.6
66
85
3
224
36
17
10
35
1.84
2125--2149
11
2.3
11
100
0
50
48
0
0
52
1.00
4056--4093
17
2.2
17
90
4
58
15
2
15
65
1.38

Tables:   1

The End!