Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023492.1 Corchorus olitorius cultivar O-4 contig23525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4492
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24


Found at i:301 original size:52 final size:52

Alignment explanation


    Indices: 197--301  Score: 133
    Period size: 52  Copynumber: 2.0  Consensus size: 52

        187 TTTCTTCATA

                         *                             * **     
        197 TTTTTCCTTGTTTTAGATCTTGTCTCCGGACAAACAAACACTCTTTTAGTGT
          1 TTTTTCCTTGTTTCAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT

                                             *                    
        249 TTTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
          1 TTTTTC-CTTGTTTCAGATCTTGTCTCCGGACAAACAAACACTCGTACA-GTGT

             
        301 T
          1 T

        302 CTTCATTCAG


Statistics
Matches: 46,  Mismatches: 5, Indels: 4
        0.84            0.09        0.07

Matches are distributed among these distances:
  51    2  0.04
  52   36  0.78
  53    8  0.17

ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43


Consensus pattern (52 bp):   
TTTTTCCTTGTTTCAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT
Done.