Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023496.1 Corchorus olitorius cultivar O-4 contig23529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39688

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1219--1276
28
2.1
28
90
0
89
15
20
31
32
1.94
1762--1801
20
2.0
20
90
0
62
30
10
20
40
1.85
2528--2557
11
2.6
11
94
5
51
43
20
20
16
1.88
5079--5109
14
2.1
15
94
5
55
38
9
12
38
1.77
6235--6268
15
2.3
15
100
0
68
35
11
20
32
1.89
6235--6277
15
2.9
15
92
0
59
30
13
20
34
1.92
6960--6984
7
3.6
7
100
0
50
0
0
12
88
0.53
7210--7241
16
2.1
16
94
5
57
62
12
12
12
1.55
7648--7697
20
2.4
21
90
3
84
54
30
8
8
1.58
13146--13216
36
2.0
36
97
0
133
18
11
16
53
1.72
21879--21906
2
14.0
2
100
0
56
50
0
0
50
1.00
37931--37955
12
2.1
12
100
0
50
40
8
24
28
1.83

Tables:   1

The End!