Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023497.1 Corchorus olitorius cultivar O-4 contig23530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28951

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
471--642
85
2.0
87
94
2
303
48
1
9
40
1.46
659--697
14
2.9
13
80
3
51
53
2
2
41
1.28
684--938
133
2.0
123
89
7
384
49
1
10
37
1.49
1282--1309
1
28.0
1
100
0
56
100
0
0
0
0.00
5484--5588
35
3.0
34
90
2
147
29
20
15
34
1.94
8722--8782
29
2.1
29
96
0
113
32
16
21
29
1.95
8850--8922
32
2.2
33
87
2
103
46
4
28
20
1.69
10270--10312
22
2.0
22
85
0
59
34
25
23
16
1.95
15447--15549
2
52.5
2
91
3
165
46
0
53
0
1.00
18530--18571
17
2.5
16
85
11
57
33
21
23
21
1.97
28548--28591
23
1.9
23
81
9
54
59
0
11
29
1.32

Tables:   1

The End!