Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002350.1 Corchorus olitorius cultivar O-4 contig02350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Found at i:1154 original size:16 final size:16

Alignment explanation


    Indices: 1119--1161  Score: 52
    Period size: 16  Copynumber: 2.8  Consensus size: 16

       1109 CCAAATCGAT

                      *     
       1119 GATAAGG-AGCAAGAC
          1 GATAAGGAAGAAAGAC

                          * 
       1134 GATAAGGAAGAAAGTC
          1 GATAAGGAAGAAAGAC

                 *      
       1150 GATAAAGAAGAA
          1 GATAAGGAAGAA

       1162 GCCAAAATTC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  15    7  0.29
  16   17  0.71

ACGTcount: A:0.53, C:0.07, G:0.30, T:0.09


Consensus pattern (16 bp):   
GATAAGGAAGAAAGAC
Done.