Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023501.1 Corchorus olitorius cultivar O-4 contig23534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7131

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
229--300
28
2.6
28
93
4
119
36
27
16
19
1.93
4194--4263
5
14.6
5
76
18
60
70
12
0
17
1.18
4179--4247
32
2.2
32
84
5
86
73
10
0
15
1.08
4182--4262
42
2.0
40
92
4
135
72
11
0
16
1.11
4876--5073
51
3.9
51
86
7
278
32
16
14
36
1.89
4867--5099
51
4.6
49
86
5
270
33
17
14
34
1.90
5621--6293
50
13.5
50
93
0
1078
31
27
12
28
1.93
6599--6695
26
3.7
26
81
2
113
19
15
21
43
1.88
6834--6881
25
1.9
25
91
0
78
33
18
10
37
1.85

Tables:   1

The End!