Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023502.1 Corchorus olitorius cultivar O-4 contig23535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4596
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:1295 original size:16 final size:15

Alignment explanation


    Indices: 1258--1298  Score: 64
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1248 CAGAGATTGC

                  *        
       1258 CAGAAAGCAATTAAA
          1 CAGAAAACAATTAAA

                           
       1273 CAGAAAACAATTAAA
          1 CAGAAAACAATTAAA

                       
       1288 CTAGAAAACAA
          1 C-AGAAAACAA

       1299 AGCAGAGTAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   15  0.62
  16    9  0.38

ACGTcount: A:0.63, C:0.15, G:0.10, T:0.12


Consensus pattern (15 bp):   
CAGAAAACAATTAAA
Done.