Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023504.1 Corchorus olitorius cultivar O-4 contig23537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19099

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
585--660
40
1.9
40
94
0
134
51
6
23
18
1.69
3110--3152
22
2.0
22
85
0
59
67
0
6
25
1.15
8121--8216
50
1.9
50
100
0
192
46
6
8
38
1.59
10298--10328
2
16.0
2
93
6
55
51
0
0
48
1.00
11444--11514
26
2.9
26
71
10
69
40
5
0
53
1.24
12747--12907
60
2.7
60
83
5
193
37
14
18
29
1.91
14407--14435
15
1.9
15
100
0
58
51
0
20
27
1.47
16313--16351
14
2.8
14
88
7
53
64
2
10
23
1.37
16242--16412
85
2.0
85
93
0
288
52
2
12
32
1.52
17293--17348
12
4.9
12
80
6
64
41
0
1
57
1.09
17291--17373
12
7.2
13
70
20
60
44
1
1
53
1.16
18492--18534
22
2.0
22
86
4
61
65
0
11
23
1.25
18411--18595
93
2.0
93
91
0
298
52
1
12
34
1.46
18488--18534
14
3.2
14
77
16
51
63
0
12
23
1.28
18426--18626
93
2.2
93
85
4
244
54
1
11
32
1.48

Tables:   1

The End!