Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023505.1 Corchorus olitorius cultivar O-4 contig23538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54394

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
993--1236
43
5.8
42
86
7
343
19
11
26
43
1.84
992--1236
84
2.9
84
97
0
463
19
11
26
42
1.84
8022--8052
15
2.1
15
93
0
53
58
0
29
12
1.35
9982--10057
29
2.6
30
83
4
84
11
9
36
42
1.74
16582--16616
9
3.9
9
92
0
61
57
0
31
11
1.34
20331--20379
26
1.9
26
87
4
73
51
10
22
16
1.74
21391--21435
21
2.1
21
87
0
63
31
33
22
13
1.92
23388--23422
11
3.2
11
87
0
52
77
0
14
8
0.99
41646--41677
16
1.9
17
93
6
57
18
15
25
40
1.90
50582--50664
22
3.8
21
73
17
64
57
1
2
38
1.19
50584--50632
25
2.0
25
84
8
64
59
0
0
40
0.98
51284--51470
85
2.2
86
90
2
290
48
3
10
37
1.53
52540--52571
16
2.0
16
100
0
64
37
12
18
31
1.88
53995--54107
56
2.0
56
98
0
217
34
13
16
35
1.88

Tables:   1

The End!