Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023527.1 Corchorus olitorius cultivar O-4 contig23560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41151

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
138--208
21
3.3
21
78
7
79
52
8
11
28
1.66
646--716
31
2.3
31
85
0
88
46
8
7
38
1.62
17917--17998
41
2.0
41
100
0
164
41
19
12
26
1.87
20901--21279
210
1.8
210
83
3
503
31
19
18
30
1.96
20901--21332
210
2.1
210
80
5
489
31
19
18
30
1.96
27324--27399
29
2.5
30
85
4
100
31
23
26
18
1.97
29069--29098
2
15.0
2
100
0
60
50
0
0
50
1.00
40822--40846
12
2.1
12
100
0
50
16
0
16
68
1.22

Tables:   1

The End!