Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023529.1 Corchorus olitorius cultivar O-4 contig23562, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12359

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
633--722
36
2.5
36
98
0
171
40
13
12
34
1.82
981--1068
27
3.3
26
79
6
104
39
27
15
17
1.90
3915--4145
108
2.2
108
92
1
385
42
11
6
39
1.66
4653--4679
1
27.0
1
100
0
54
100
0
0
0
0.00
6513--6589
2
43.5
2
69
23
57
45
2
0
51
1.14
6511--6589
12
6.8
12
75
16
69
45
2
0
51
1.14
6510--6589
23
3.4
23
77
14
83
46
2
0
51
1.14
8523--8634
56
2.0
55
96
1
206
34
23
1
40
1.65
8529--8647
56
2.1
56
87
6
179
39
21
2
36
1.67
8698--8779
42
2.0
42
92
2
139
31
6
15
46
1.71
10636--10713
28
2.8
29
82
5
88
37
10
16
35
1.83
11472--11535
18
3.5
18
81
10
58
1
26
1
70
1.05
11631--11728
16
6.2
16
75
8
67
14
46
33
5
1.66
11613--11713
48
2.1
47
83
7
123
13
44
34
6
1.71

Tables:   1

The End!