Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023531.1 Corchorus olitorius cultivar O-4 contig23564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2092
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30


Found at i:1346 original size:34 final size:34

Alignment explanation


    Indices: 1308--1403  Score: 129
    Period size: 34  Copynumber: 2.8  Consensus size: 34

       1298 AAAAATTGAA

                             **               
       1308 TGGGAACTTTCCCAATTTGAAAACTTAAAACCGG
          1 TGGGAACTTTCCCAATTACAAAACTTAAAACCGG

                         *                 *  
       1342 TGGGAACTTTCCCGATTACAAAACTTAAAACTGG
          1 TGGGAACTTTCCCAATTACAAAACTTAAAACCGG

                      *     * *         
       1376 TGGGAACTTTTCCAATAAAAAAACTTAA
          1 TGGGAACTTTCCCAATTACAAAACTTAA

       1404 TGATATTCTC


Statistics
Matches: 54,  Mismatches: 8, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  34   54  1.00

ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27


Consensus pattern (34 bp):   
TGGGAACTTTCCCAATTACAAAACTTAAAACCGG
Done.