Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023540.1 Corchorus olitorius cultivar O-4 contig23573, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6154
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26


Found at i:1474 original size:18 final size:18

Alignment explanation


    Indices: 1453--1496  Score: 79
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       1443 CTTGGACGGC

                              
       1453 GATGAAGAAGAAGATCGA
          1 GATGAAGAAGAAGATCGA

                              
       1471 GATGAAGAAGAAGATCGA
          1 GATGAAGAAGAAGATCGA

              *     
       1489 GAAGAAGA
          1 GATGAAGA

       1497 TAAAAACTGA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09


Consensus pattern (18 bp):   
GATGAAGAAGAAGATCGA
Done.