Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023547.1 Corchorus olitorius cultivar O-4 contig23580, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5587
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:5281 original size:24 final size:24

Alignment explanation


    Indices: 5247--5292  Score: 67
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       5237 AAGAAATTTT

                       *             
       5247 TTTTTTATTTATGACGCAGAAAAAC
          1 TTTTTTATTTAAGACGCA-AAAAAC

                                  
       5272 TTTTTT-TTTAAGACGCAAAAA
          1 TTTTTTATTTAAGACGCAAAAA

       5293 CGCAACACAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    4  0.20
  24   10  0.50
  25    6  0.30

ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41


Consensus pattern (24 bp):   
TTTTTTATTTAAGACGCAAAAAAC
Done.