Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023548.1 Corchorus olitorius cultivar O-4 contig23581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91832

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6201--6373
93
1.9
93
82
2
222
20
23
21
34
1.97
6185--6381
31
6.4
31
83
2
198
21
24
22
31
1.98
6849--6878
3
10.0
3
100
0
60
66
0
0
33
0.92
7072--7105
5
6.8
5
100
0
68
82
0
17
0
0.67
8844--8902
31
1.9
31
96
0
109
33
22
13
30
1.92
13697--13721
13
1.9
13
100
0
50
8
20
0
72
1.10
20800--20841
15
2.9
15
85
3
59
66
2
0
30
1.04
29169--29193
13
1.9
13
100
0
50
40
8
4
48
1.51
36720--36890
22
7.9
22
76
9
138
40
7
14
37
1.75
36766--36890
65
1.9
64
85
9
173
37
8
12
41
1.73
37536--37575
21
1.9
21
89
0
62
25
10
0
65
1.24
43278--43469
98
2.0
98
94
0
339
30
10
21
36
1.88
43416--43463
24
2.0
24
95
0
87
27
8
22
41
1.82
43419--43503
20
4.1
20
83
6
89
32
8
16
42
1.78
46668--46713
24
1.9
24
82
8
58
39
6
34
19
1.78
47764--47802
18
2.1
19
90
4
62
41
15
17
25
1.89
53764--53788
8
3.1
8
100
0
50
28
24
12
36
1.91
55290--55345
7
8.1
7
76
4
51
32
5
1
60
1.29
60748--60798
26
1.9
26
92
4
84
43
0
3
52
1.19
64713--64761
25
2.0
25
100
0
98
12
32
20
34
1.90
65607--65655
25
2.0
25
100
0
98
12
32
20
34
1.90
66195--66243
25
2.0
25
95
0
89
12
32
22
32
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79298--79338
6
6.8
6
100
0
82
31
34
0
34
1.58
84772--84817
23
2.0
23
95
0
83
34
21
10
32
1.88
84855--84884
1
30.0
1
100
0
60
100
0
0
0
0.00
86148--86193
22
2.0
23
95
4
85
26
34
13
26
1.92
87648--87685
2
20.0
2
86
10
53
44
0
0
55
0.99

Tables:   1

The End!