Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023552.1 Corchorus olitorius cultivar O-4 contig23585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13426

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6269--6559
107
2.8
103
88
4
415
43
7
9
39
1.67
6640--6816
88
2.0
88
95
0
318
35
11
23
29
1.90
8136--8172
18
2.1
18
94
0
65
21
8
45
24
1.78
8467--8686
110
2.0
110
88
5
327
31
11
20
36
1.88
10404--10438
16
2.2
16
94
0
61
54
0
22
22
1.45
10476--10677
4
52.8
4
66
14
97
66
0
7
25
1.21
10390--10642
19
12.9
20
69
20
117
64
0
9
25
1.30
10475--10584
27
4.4
27
72
19
103
64
0
7
27
1.26
10462--10671
46
4.6
46
90
5
304
66
0
7
25
1.22
12198--12509
54
5.8
54
80
7
300
32
20
17
30
1.95
12268--12505
106
2.2
107
85
5
320
32
21
16
29
1.95
12373--12636
142
1.9
142
91
3
433
31
22
18
28
1.97
12427--12597
88
1.9
89
90
5
276
32
22
16
28
1.96
12516--12702
54
3.5
53
85
7
263
32
22
17
27
1.96
12320--12708
195
2.0
196
88
3
579
33
21
17
27
1.96
12676--13041
54
6.8
53
84
4
455
39
20
14
25
1.91
12235--12816
303
1.9
303
78
7
637
34
20
17
28
1.95
12687--13041
108
3.3
108
89
1
516
39
20
14
25
1.90
12649--13041
162
2.4
162
86
3
531
38
20
15
25
1.92

Tables:   1

The End!