Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023553.1 Corchorus olitorius cultivar O-4 contig23586, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16667
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:5578 original size:2 final size:2

Alignment explanation


    Indices: 5573--5597  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       5563 TTTTTTTTTG

                                                 
       5573 GT GT GT GT GT GT GT GT GT GT GT GT G
          1 GT GT GT GT GT GT GT GT GT GT GT GT G

       5598 GTTGAGAAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48


Consensus pattern (2 bp):   
GT

Found at i:11155 original size:15 final size:15

Alignment explanation


    Indices: 11132--11161  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      11122 AGTTTGCGAC

                           
      11132 ATATATATATATATA
          1 ATATATATATATATA

                *          
      11147 ATATGTATATATATA
          1 ATATATATATATATA

      11162 GTCTTAGCTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (15 bp):   
ATATATATATATATA
Done.