Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023554.1 Corchorus olitorius cultivar O-4 contig23587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12411

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
484--510
14
1.9
14
100
0
54
0
25
0
74
0.83
570--644
37
2.0
38
84
10
100
30
16
17
36
1.91
858--896
14
2.8
14
84
0
51
33
15
5
46
1.68
4424--4509
31
2.9
29
81
13
95
31
18
12
37
1.89
5156--5407
19
12.9
20
68
20
108
63
1
9
24
1.34
5240--5437
27
7.5
27
68
19
96
65
1
7
25
1.25
5227--5434
46
4.7
44
89
4
278
65
0
7
25
1.25
5268--5419
11
13.7
11
69
9
67
67
0
7
25
1.21
5169--5384
8
28.1
8
65
17
68
62
1
10
25
1.37
5241--5419
4
46.0
4
65
13
88
65
1
7
25
1.25
5840--5873
17
2.0
17
100
0
68
47
0
11
41
1.40

Tables:   1

The End!