Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023563.1 Corchorus olitorius cultivar O-4 contig23596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7822
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32


Found at i:6924 original size:9 final size:8

Alignment explanation


    Indices: 6910--6951  Score: 66
    Period size: 8  Copynumber: 5.0  Consensus size: 8

       6900 AATTACTTAT

                    
       6910 GGAAATTA
          1 GGAAATTA

                     
       6918 GGGAAATTA
          1 -GGAAATTA

                     
       6927 TGGAAATTA
          1 -GGAAATTA

                    
       6936 GGAAATTA
          1 GGAAATTA

                    
       6944 GGAAATTA
          1 GGAAATTA

       6952 AATGAATTAA


Statistics
Matches: 32,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
   8   16  0.50
   9   16  0.50

ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26


Consensus pattern (8 bp):   
GGAAATTA

Found at i:6929 original size:18 final size:17

Alignment explanation


    Indices: 6906--6951  Score: 76
    Period size: 18  Copynumber: 2.7  Consensus size: 17

       6896 CCCAAATTAC

                              
       6906 TTATGGAAATTAGGGAAA
          1 TTATGGAAATTA-GGAAA

                             
       6924 TTATGGAAATTAGGAAA
          1 TTATGGAAATTAGGAAA

                        
       6941 TTA-GGAAATTA
          1 TTATGGAAATTA

       6952 AATGAATTAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  16    8  0.29
  17    8  0.29
  18   12  0.43

ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30


Consensus pattern (17 bp):   
TTATGGAAATTAGGAAA

Done.