Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023569.1 Corchorus olitorius cultivar O-4 contig23602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4276
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:918 original size:11 final size:11

Alignment explanation


    Indices: 902--926  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        892 CCCTCTTCTT

                       
        902 AAACTAGAGAA
          1 AAACTAGAGAA

                       
        913 AAACTAGAGAA
          1 AAACTAGAGAA

               
        924 AAA
          1 AAA

        927 TAAAAGATGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08


Consensus pattern (11 bp):   
AAACTAGAGAA

Found at i:3985 original size:30 final size:29

Alignment explanation


    Indices: 3942--3998  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       3932 TTAGGATTAG

                                         
       3942 TTATTTATGCTTTAATTTTCAA-TTTCCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCCT

                                         
       3970 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

       3999 ATTAATAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  28    4  0.15
  29    5  0.19
  30   13  0.50
  31    4  0.15

ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60


Consensus pattern (29 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCCT
Done.