Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023572.1 Corchorus olitorius cultivar O-4 contig23605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7146

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1318--1363
20
2.3
20
96
0
83
63
21
4
10
1.44
4052--4106
22
2.5
22
90
0
83
36
16
5
41
1.71
4147--4480
22
15.3
21
71
13
169
35
18
10
35
1.85
4377--4438
23
2.7
23
82
9
81
40
12
6
40
1.69
4490--4590
22
4.7
21
78
8
96
35
14
9
39
1.80
4673--4941
22
12.3
22
70
9
104
32
15
10
41
1.81
4965--5022
22
2.6
23
83
5
75
48
15
5
31
1.67
5035--5094
22
2.7
22
80
10
68
35
16
10
38
1.82
5127--5333
66
3.1
65
82
4
229
37
19
8
34
1.83
5099--5330
22
10.5
22
75
9
177
37
17
9
36
1.82
5496--5533
19
2.0
20
85
15
53
63
2
5
28
1.30
6580--6681
22
4.7
22
76
2
98
39
14
10
35
1.81
6580--6701
22
5.6
21
72
11
95
40
13
10
36
1.79
6580--6680
43
2.3
44
82
1
123
39
13
10
35
1.80
6686--6758
37
2.0
37
91
0
119
38
6
5
49
1.53

Tables:   1

The End!