Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023576.1 Corchorus olitorius cultivar O-4 contig23609, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3318
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:2714 original size:12 final size:12

Alignment explanation


    Indices: 2697--2721  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2687 GGTGGGGGGT

                        
       2697 GTGCTTGAAGAG
          1 GTGCTTGAAGAG

                        
       2709 GTGCTTGAAGAG
          1 GTGCTTGAAGAG

             
       2721 G
          1 G

       2722 AGGTGTCATG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.08, G:0.44, T:0.24


Consensus pattern (12 bp):   
GTGCTTGAAGAG
Done.