Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023578.1 Corchorus olitorius cultivar O-4 contig23611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13638

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
458--519
31
2.0
31
96
0
115
32
17
6
43
1.75
1733--1774
22
1.9
22
95
0
75
78
11
4
4
1.06
2541--2621
27
2.9
28
80
9
94
40
7
9
41
1.66
2567--2646
27
3.0
27
81
7
92
41
8
10
40
1.70
6503--6811
167
1.8
168
95
2
559
42
11
9
36
1.74
6798--6839
19
2.3
18
84
8
57
61
0
4
33
1.17
6803--6839
19
2.0
19
89
5
58
64
0
2
32
1.07
7030--7079
25
2.1
24
85
7
66
34
0
16
50
1.45
7033--7091
16
4.2
15
70
24
56
30
0
18
50
1.47
8972--9022
24
2.1
25
85
3
68
17
5
5
70
1.28
12216--12247
16
2.0
16
93
0
55
9
25
21
43
1.82

Tables:   1

The End!