Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002358.1 Corchorus olitorius cultivar O-4 contig02358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3495
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:413 original size:2 final size:2

Alignment explanation


    Indices: 406--439  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        396 AATAAGCTTA

                                                              
        406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        440 TTGATAACTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:2574 original size:16 final size:16

Alignment explanation


    Indices: 2555--2590  Score: 72
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       2545 AAATTTTGAA

                            
       2555 TAATAACTAACTTTCT
          1 TAATAACTAACTTTCT

                            
       2571 TAATAACTAACTTTCT
          1 TAATAACTAACTTTCT

                
       2587 TAAT
          1 TAAT

       2591 CTTAATGATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44


Consensus pattern (16 bp):   
TAATAACTAACTTTCT
Done.