Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023582.1 Corchorus olitorius cultivar O-4 contig23615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20577
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:4753 original size:31 final size:31
Alignment explanation
Indices: 4717--5340 Score: 795
Period size: 31 Copynumber: 19.9 Consensus size: 31
4707 CAAAGTAATA
* * *
4717 ATCCTAAAACAGGATTGAGAAGTAAACAACG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
*
4748 ATCCTAAACCAGGATTGAGAAATAAACAACG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
*
4779 ATCCTAAACCAGGATTGAGAAATAAACAAGG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
* *
4810 ATCCTGAACCAGGATGGAGAAAT-AACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
4840 ATCCTAAACCAGGATTGAGAAATAAACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
* * *
4871 ATCCTAAACCAGGATGGACAAATAAACAACG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
4902 ATCCTAAACCAGGATTGAGAAATAAACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
* *
4933 ATCCTGAACCAGGATGGAGAAAT-AACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
4963 ATCCTAAACCAGGATTGAGAAATAAACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
* *
4994 ATCCTAAACCAGGATGGAGAAATAAACAACG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
5025 ATCCTAAACCAGGATTGAGAAATAAACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
5056 ATCCTAAACCAGGATTGAGAAATAAACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
*
5087 ATCCTAAACCAGGATGGAGAAAT-AACAATG
1 ATCCTAAACCAGGATTGAGAAATAAACAATG
5117 ATCCTAAACCAGGATT-A-AAATAAAGCAATG
1 ATCCTAAACCAGGATTGAGAAATAAA-CAATG
5147 ATCCTAAACCAGGATT-A-AAATAAAGCAATG
1 ATCCTAAACCAGGATTGAGAAATAAA-CAATG
5177 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATG
1 ATCCTAAACCAGGATTG--AG--AA---ATAAA-CAATG
5216 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATG
1 ATCCTAAACCAGGATTG--AG--AA---ATAAA-CAATG
** * *
5255 ATCCCGAACCAAGA-TCA-AAATAAAGCAATG
1 ATCCTAAACCAGGATTGAGAAATAAA-CAATG
*
5285 ATCCTAGACCAGGATT-A-AAATAAAGCAATG
1 ATCCTAAACCAGGATTGAGAAATAAA-CAATG
*
5315 ATCCTAAACCAGGATTGA-AAGTAAAC
1 ATCCTAAACCAGGATTGAGAAATAAAC
5341 TGATAAAGCA
Statistics
Matches: 544, Mismatches: 34, Indels: 31
0.89 0.06 0.05
Matches are distributed among these distances:
28 4 0.01
29 3 0.01
30 179 0.33
31 290 0.53
33 3 0.01
36 3 0.01
38 1 0.00
39 61 0.11
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (31 bp):
ATCCTAAACCAGGATTGAGAAATAAACAATG
Found at i:4936 original size:123 final size:122
Alignment explanation
Indices: 4717--5329 Score: 790
Period size: 123 Copynumber: 4.9 Consensus size: 122
4707 CAAAGTAATA
* * *
4717 ATCCTAAAACAGGATTGAGAAGTAAACAACGATCCTAAACCAGGATTGAGAAATAAACAACGATC
1 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGA-TGA-AAATAAACAACGATC
* *
4782 CTAAACCAGGATTGAGAAATAAACAAGGATCCTGAACCAGGATGGAGAAAT-AACAATG
64 CTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGGAGAAATAAACAATG
4840 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGGACAAATAAACAACGATC
1 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGAT-GA-AAATAAACAACGATC
*
4905 CTAAACCAGGATTGAGAAATAAACAATGATCCTGAACCAGGATGGAGAAAT-AACAATG
64 CTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGGAGAAATAAACAATG
4963 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGGAGAAATAAACAACGATC
1 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGAT-GA-AAATAAACAACGATC
*
5028 CTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATTGAGAAATAAACAATG
64 CTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGGAGAAATAAACAATG
* * *
5087 ATCCTAAACCAGGATGGAGAAAT-AACAATGATCCTAAACCAGGATTAAAATAAAGCAATGATCC
1 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGAAAATAAA-CAACGATCC
*
5151 TAAACCAGGATT-A-AAATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAA
65 TAAACCAGGATTGAGAAATAAA-CAATGATCCTAAACCAGGA-TG-GAG--AA---ATAAA-CAA
5214 TG
121 TG
** * *
5216 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCCGAACCAAGATCAAAATAAAGC
1 ATCCTAAACCAGGATTG--AG--AA---ATAAA-CAATGATCCTAAACCAGGATGAAAATAAA-C
* *
5281 AATGATCCTAGACCAGGATT-A-AAATAAAGCAATGATCCTAAACCAGGAT
57 AACGATCCTAAACCAGGATTGAGAAATAAA-CAATGATCCTAAACCAGGAT
5330 TGAAAGTAAA
Statistics
Matches: 450, Mismatches: 19, Indels: 28
0.91 0.04 0.06
Matches are distributed among these distances:
120 7 0.02
121 27 0.06
122 23 0.05
123 253 0.56
124 29 0.06
125 2 0.00
128 5 0.01
129 21 0.05
131 2 0.00
133 2 0.00
136 2 0.00
137 3 0.01
138 74 0.16
ACGTcount: A:0.47, C:0.18, G:0.17, T:0.17
Consensus pattern (122 bp):
ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGAAAATAAACAACGATCCT
AAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATGGAGAAATAAACAATG
Found at i:4997 original size:154 final size:153
Alignment explanation
Indices: 4717--5340 Score: 778
Period size: 154 Copynumber: 4.0 Consensus size: 153
4707 CAAAGTAATA
* * * *
4717 ATCCTAAAACAGGATTGAGAAGTAAACAACGATCCTAAACCAGGATTGAGAAATAAACAACGATC
1 ATCCTAAACCAGGATGGAGAAATAAACAACGATCCTAAACCAGGATTGAGAAATAAACAATGATC
* * * *
4782 CTAAACCAGGATTGAGAAATAAACAAGGATCCTGAACCAGGATGGAGAAAT-AA-CAATGATCCT
66 CTAAACCAGGATGGAGAAATAAACAATGATCCTAAACCAGGAT-TA-AAATAAAGCAATGATCCT
4845 AAACCAGGATTGAGAAATAAACAATG
129 AAACCAGGATTGA-AAATAAACAATG
*
4871 ATCCTAAACCAGGATGGACAAATAAACAACGATCCTAAACCAGGATTGAGAAATAAACAATGATC
1 ATCCTAAACCAGGATGGAGAAATAAACAACGATCCTAAACCAGGATTGAGAAATAAACAATGATC
*
4936 CTGAACCAGGATGGAGAAAT-AACAATGATCCTAAACCAGGATTGAGAAATAAA-CAATGATCCT
66 CTAAACCAGGATGGAGAAATAAACAATGATCCTAAACCAGGATT-A-AAATAAAGCAATGATCCT
* *
4999 AAACCAGGATGGAGAAATAAACAACG
129 AAACCAGGATTGA-AAATAAACAATG
* *
5025 ATCCTAAACCAGGATTGAGAAATAAACAATGATCCTAAACCAGGATTGAGAAATAAACAATGATC
1 ATCCTAAACCAGGATGGAGAAATAAACAACGATCCTAAACCAGGATTGAGAAATAAACAATGATC
5090 CTAAACCAGGATGGAGAAAT-AACAATGATCCTAAACCAGGATTAAAATAAAGCAATGATCCTAA
66 CTAAACCAGGATGGAGAAATAAACAATGATCCTAAACCAGGATTAAAATAAAGCAATGATCCTAA
5154 ACCAGGATT-AAAATAAAGCAATG
131 ACCAGGATTGAAAATAAA-CAATG
* *
5177 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAAC
1 ATCCTAAACCAGGA-TG-GAG--AA---ATAAA-CAACGATCCTAAACCAGGATTG--AG--AA-
** * * *
5242 CGATAAAGCAATGATCCCGAACCAAGAT-CA-AAATAAAGCAATGATCCTAGACCAGGATTAAAA
53 --ATAAA-CAATGATCCTAAACCAGGATGGAGAAATAAA-CAATGATCCTAAACCAGGATTAAAA
*
5305 TAAAGCAATGATCCTAAACCAGGATTGAAAGTAAAC
114 TAAAGCAATGATCCTAAACCAGGATTGAAAATAAAC
5341 TGATAAAGCA
Statistics
Matches: 421, Mismatches: 26, Indels: 32
0.88 0.05 0.07
Matches are distributed among these distances:
151 7 0.02
152 26 0.06
153 48 0.11
154 220 0.52
156 2 0.00
159 5 0.01
160 22 0.05
162 2 0.00
164 2 0.00
166 4 0.01
167 8 0.02
168 68 0.16
169 7 0.02
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (153 bp):
ATCCTAAACCAGGATGGAGAAATAAACAACGATCCTAAACCAGGATTGAGAAATAAACAATGATC
CTAAACCAGGATGGAGAAATAAACAATGATCCTAAACCAGGATTAAAATAAAGCAATGATCCTAA
ACCAGGATTGAAAATAAACAATG
Found at i:5220 original size:39 final size:38
Alignment explanation
Indices: 5166--5368 Score: 215
Period size: 39 Copynumber: 5.7 Consensus size: 38
5156 CAGGATTAAA
5166 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACCG
1 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAA-CG
5205 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACCG
1 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAA-CG
**
5244 ATAAAGCAATGATCCCGAACCA--A--G--A-TCAAA--
1 ATAAAGCAATGATCCTAAACCAGGATTGAAAGT-AAACG
*
5274 ATAAAGCAATGATCCTAGACCAGGA-T-----TAAA--
1 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACG
5304 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACTG
1 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAAC-G
*
5343 ATAAAGCACTGATCCTAAACCAGGAT
1 ATAAAGCAATGATCCTAAACCAGGAT
5369 CAAAAATAAA
Statistics
Matches: 144, Mismatches: 7, Indels: 26
0.81 0.04 0.15
Matches are distributed among these distances:
30 46 0.32
31 2 0.01
32 2 0.01
33 4 0.03
35 1 0.01
36 4 0.03
37 1 0.01
39 84 0.58
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (38 bp):
ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACG
Found at i:5308 original size:138 final size:138
Alignment explanation
Indices: 5112--5368 Score: 451
Period size: 138 Copynumber: 1.9 Consensus size: 138
5102 GGAGAAATAA
* * *
5112 CAATGATCCTAAACCAGGATTAAAATAAAGCAATGATCCTAAACCAGGATTAAAATAAAGCAATG
1 CAATGATCCCAAACCAAGATCAAAATAAAGCAATGATCCTAAACCAGGATTAAAATAAAGCAATG
5177 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAAC
66 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAAC
5242 CGATAAAG
131 CGATAAAG
* *
5250 CAATGATCCCGAACCAAGATCAAAATAAAGCAATGATCCTAGACCAGGATTAAAATAAAGCAATG
1 CAATGATCCCAAACCAAGATCAAAATAAAGCAATGATCCTAAACCAGGATTAAAATAAAGCAATG
* *
5315 ATCCTAAACCAGGATTGAAAGTAAACTGATAAAGCACTGATCCTAAACCAGGAT
66 ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCTAAACCAGGAT
5369 CAAAAATAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 112 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (138 bp):
CAATGATCCCAAACCAAGATCAAAATAAAGCAATGATCCTAAACCAGGATTAAAATAAAGCAATG
ATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAAC
CGATAAAG
Found at i:5347 original size:69 final size:69
Alignment explanation
Indices: 5136--5378 Score: 258
Period size: 69 Copynumber: 3.5 Consensus size: 69
5126 CAGGATTAAA
5136 ATAAAGCAATGATCCTAAACCAGGAT-TAAAATAAAGCAATGATCCTAAACCAGGATTGAAAGTA
1 ATAAAGCAATGATCCTAAACCAGGATATAAAATAAAGCAATGATCCTAAACCAGGATTGAAAGTA
5200 AACCG
66 AA-CG
**
5205 ATAAAGCAATGATCCTAAACCAGGATTGAAAGTAAACCGATAAAGCAATGATCCCGAACCA--A-
1 ATAAAGCAATGATCCTAAACCAGGA-T---A-TAAA---ATAAAGCAATGATCCTAAACCAGGAT
5267 -G--A-TCAAA--
58 TGAAAGT-AAACG
*
5274 ATAAAGCAATGATCCTAGACCAGGAT-TAAAATAAAGCAATGATCCTAAACCAGGATTGAAAGTA
1 ATAAAGCAATGATCCTAAACCAGGATATAAAATAAAGCAATGATCCTAAACCAGGATTGAAAGTA
5338 AACTG
66 AAC-G
*
5343 ATAAAGCACTGATCCTAAACCAGGATCA-AAAATAAA
1 ATAAAGCAATGATCCTAAACCAGGAT-ATAAAATAAA
5379 TTGACAAAGT
Statistics
Matches: 145, Mismatches: 7, Indels: 43
0.74 0.04 0.22
Matches are distributed among these distances:
60 20 0.14
62 1 0.01
63 4 0.03
64 1 0.01
66 4 0.03
67 1 0.01
68 1 0.01
69 73 0.50
70 9 0.06
71 1 0.01
72 4 0.03
74 1 0.01
75 4 0.03
76 1 0.01
78 20 0.14
ACGTcount: A:0.48, C:0.18, G:0.16, T:0.18
Consensus pattern (69 bp):
ATAAAGCAATGATCCTAAACCAGGATATAAAATAAAGCAATGATCCTAAACCAGGATTGAAAGTA
AACG
Found at i:6153 original size:36 final size:36
Alignment explanation
Indices: 6081--6427 Score: 337
Period size: 36 Copynumber: 9.5 Consensus size: 36
6071 GACATTTAAA
* *
6081 CTGGGTCAACTGAACTAAACTGAAG-AAAGATCGCC
1 CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
* * * * *
6116 CTGGATCAATTGAAGTAGACTGCAGAAAAGATTGCC
1 CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
* * *
6152 CTGGACCAACTGAAATAAACTGAA-TAAGGATCGCC
1 CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
*
6187 CTGGATCAAACTGAAATAAACTGTAGAAAAGATCGCC
1 CTGGATC-AACTGAAATAAACTGAAGAAAAGATCGCC
* *
6224 CTGGATCAACTTAAATAAACTGAAGAAGAGATCGCC
1 CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
* *
6260 TTGGATCAACTGAAATAAACTAAAG-AAAGATCGCC
1 CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
* * *
6295 CTAGATCAACTGAAATGAATTGAAGAAAAGATCGCC
1 CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
* * *
6331 CTAGATCAATGATCAACTAAAATAAACTGAAG-AAAGACCACC
1 CT-G------GATCAACTGAAATAAACTGAAGAAAAGATCGCC
* ** *
6373 CTGGGTCAGTTGAAATAAA-TCGAATG-AAGGATCGCC
1 CTGGATCAACTGAAATAAACT-GAA-GAAAAGATCGCC
6409 CTGGATCAACTGAAATAAA
1 CTGGATCAACTGAAATAAA
6428 ACTTTAGCAA
Statistics
Matches: 253, Mismatches: 46, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
34 1 0.00
35 78 0.31
36 128 0.51
37 16 0.06
41 1 0.00
42 10 0.04
43 19 0.08
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (36 bp):
CTGGATCAACTGAAATAAACTGAAGAAAAGATCGCC
Found at i:6319 original size:71 final size:72
Alignment explanation
Indices: 6081--6427 Score: 355
Period size: 71 Copynumber: 4.8 Consensus size: 72
6071 GACATTTAAA
* * * * * *
6081 CTGGGTCAACTGAACTAAACTGAAGAA-AGATCGCCCTGGATCAATTGAAGTAGACTGCAGAAAA
1 CTGGATCAACTGAAATAAACTGAAGAAGAGATCGCCCTGGATCAACTGAAATAAACTGAAGAAAA
*
6145 GATTGCC
66 GATCGCC
* * *
6152 CTGGACCAACTGAAATAAACTGAATAAG-GATCGCCCTGGATCAAACTGAAATAAACTGTAGAAA
1 CTGGATCAACTGAAATAAACTGAAGAAGAGATCGCCCTGGATC-AACTGAAATAAACTGAAGAAA
6216 AGATCGCC
65 AGATCGCC
* * *
6224 CTGGATCAACTTAAATAAACTGAAGAAGAGATCGCCTTGGATCAACTGAAATAAACTAAAG-AAA
1 CTGGATCAACTGAAATAAACTGAAGAAGAGATCGCCCTGGATCAACTGAAATAAACTGAAGAAAA
6288 GATCGCC
66 GATCGCC
* * * * *
6295 CTAGATCAACTGAAATGAATTGAAGAAAAGATCGCCCTAGATCAATGATCAACTAAAATAAACTG
1 CTGGATCAACTGAAATAAACTGAAGAAGAGATCGCCCT-G------GATCAACTGAAATAAACTG
* *
6360 AAG-AAAGACCACC
59 AAGAAAAGATCGCC
* **
6373 CTGGGTCAGTTGAAATAAA-TCGAATGAAG-GATCGCCCTGGATCAACTGAAATAAA
1 CTGGATCAACTGAAATAAACT-GAA-GAAGAGATCGCCCTGGATCAACTGAAATAAA
6428 ACTTTAGCAA
Statistics
Matches: 232, Mismatches: 32, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
71 94 0.41
72 66 0.28
73 13 0.06
77 2 0.01
78 54 0.23
79 3 0.01
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (72 bp):
CTGGATCAACTGAAATAAACTGAAGAAGAGATCGCCCTGGATCAACTGAAATAAACTGAAGAAAA
GATCGCC
Found at i:6406 original size:78 final size:78
Alignment explanation
Indices: 6263--6417 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 78
6253 GATCGCCTTG
* * * * *
6263 GATCAACTGAAATAAACTAAAGAAAGATCGCCCTAGATCAACTGAAATGAATTGAAGAAAAGATC
1 GATCAACTAAAATAAACTAAAGAAAGACCACCCTAGATCAACTGAAATAAATCGAAGAAAAGATC
6328 GCCCTAGATCAAT
66 GCCCTAGATCAAT
* * * ** *
6341 GATCAACTAAAATAAACTGAAGAAAGACCACCCTGGGTCAGTTGAAATAAATCGAATG-AAGGAT
1 GATCAACTAAAATAAACTAAAGAAAGACCACCCTAGATCAACTGAAATAAATCGAA-GAAAAGAT
*
6405 CGCCCTGGATCAA
65 CGCCCTAGATCAA
6418 CTGAAATAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 63 0.98
79 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (78 bp):
GATCAACTAAAATAAACTAAAGAAAGACCACCCTAGATCAACTGAAATAAATCGAAGAAAAGATC
GCCCTAGATCAAT
Found at i:9162 original size:25 final size:26
Alignment explanation
Indices: 9117--9166 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
9107 CGTTTTTAAT
* *
9117 TAATTTTTTTTGTGATTTTGCGTTTC
1 TAATTTTTTTTGAGATCTTGCGTTTC
9143 TAATTTTTTTTGAG-TCTTGCGTTT
1 TAATTTTTTTTGAGATCTTGCGTTT
9167 TTGAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.12, C:0.08, G:0.16, T:0.64
Consensus pattern (26 bp):
TAATTTTTTTTGAGATCTTGCGTTTC
Found at i:15564 original size:15 final size:15
Alignment explanation
Indices: 15529--15570 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15519 TTACTTTGCT
*
15529 TTGTTTTCTAGTTTAA
1 TTGTTTTCT-TTTTAA
*
15545 CTGTTTTCTTTTTAA
1 TTGTTTTCTTTTTAA
15560 TTGTTTTCTTT
1 TTGTTTTCTTT
15571 CAACCTCTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.12, C:0.10, G:0.10, T:0.69
Consensus pattern (15 bp):
TTGTTTTCTTTTTAA
Done.