Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023585.1 Corchorus olitorius cultivar O-4 contig23618, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5780
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:5482 original size:21 final size:21

Alignment explanation


    Indices: 5456--5547  Score: 132
    Period size: 21  Copynumber: 4.4  Consensus size: 21

       5446 TGCTAGAAGT

                                  
       5456 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                     *          *
       5477 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       5498 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
       5519 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       5540 TCATTGGA
          1 TCATTGGA

       5548 AATGCCTAAG


Statistics
Matches: 64,  Mismatches: 6, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   63  0.98

ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.