Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023586.1 Corchorus olitorius cultivar O-4 contig23619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56391

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4699--4760
30
2.1
30
96
0
115
41
4
27
25
1.75
10150--10193
23
1.9
23
100
0
88
15
27
4
52
1.63
13592--13651
22
2.7
22
82
7
77
40
11
10
38
1.75
16168--16205
19
2.1
18
85
14
51
36
10
34
18
1.85
16233--16291
21
2.8
21
92
5
84
33
18
15
32
1.92
17852--17887
2
18.0
2
94
0
63
50
2
0
47
1.15
24110--24150
13
3.2
13
100
0
82
29
7
9
53
1.60
27993--28027
18
1.9
18
88
0
52
25
5
22
45
1.74
35362--35399
14
2.5
15
87
8
51
50
42
5
2
1.39
37438--37604
87
2.0
83
82
12
202
45
7
8
38
1.63
39759--39802
16
2.7
17
79
10
56
15
11
34
38
1.84
47108--47143
18
2.0
18
94
0
63
33
19
25
22
1.97
48496--48583
42
2.1
42
100
0
176
18
19
15
46
1.84
48502--48573
24
3.2
24
64
28
68
15
19
18
47
1.83
48509--48577
22
3.2
22
63
29
58
14
20
15
49
1.80
52732--52761
15
2.0
15
100
0
60
33
40
13
13
1.83
53258--53284
12
2.2
12
100
0
54
51
7
22
18
1.70

Tables:   1

The End!