Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023587.1 Corchorus olitorius cultivar O-4 contig23620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13086

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
159--210
22
2.3
23
83
3
61
38
13
13
34
1.84
252--552
22
14.0
22
71
13
112
36
16
8
38
1.80
309--371
24
2.7
24
90
4
94
39
19
6
34
1.77
416--552
66
2.1
64
83
5
168
34
14
8
42
1.77
453--581
64
2.0
66
81
3
154
37
14
7
39
1.75
633--925
22
13.4
22
72
13
124
31
14
11
42
1.81
931--1047
22
5.4
21
69
23
64
33
17
8
41
1.79
933--1047
44
2.6
43
78
11
117
33
17
8
40
1.80
1071--1265
22
8.8
22
72
12
116
37
17
8
35
1.81
1132--1231
44
2.3
43
86
8
139
33
18
12
37
1.87
2166--2207
19
2.3
18
80
15
50
61
2
2
33
1.21
3142--3190
21
2.3
21
83
10
64
51
0
0
48
1.00
3904--4000
48
2.0
48
100
0
194
18
18
12
50
1.77
4632--4668
19
2.0
19
89
5
58
64
0
0
35
0.94
5120--5363
43
5.8
43
85
6
347
42
25
10
21
1.84
5120--5365
84
2.9
84
96
0
456
42
25
10
21
1.84
11698--11732
18
2.0
18
88
5
54
37
11
5
45
1.64

Tables:   1

The End!