Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023591.1 Corchorus olitorius cultivar O-4 contig23624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26417

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--155
40
3.8
40
91
1
247
36
17
27
19
1.94
128--308
47
3.9
47
84
5
224
39
19
23
17
1.92
341--486
40
3.6
41
80
13
178
36
21
28
13
1.91
7875--7923
25
2.0
25
91
0
80
16
32
16
34
1.91
7920--7961
21
2.0
21
86
9
59
47
35
0
16
1.47
10980--11294
175
1.8
173
81
4
400
36
20
13
29
1.91
12562--12622
30
2.0
31
96
3
115
32
13
13
40
1.82
13623--13664
17
2.5
17
96
0
75
35
11
28
23
1.91
13992--14048
27
2.1
28
86
3
80
61
22
8
7
1.50
18686--18724
15
2.5
16
84
16
55
76
2
10
10
1.10
20286--20331
20
2.3
20
77
3
58
6
6
19
67
1.36
24106--24393
84
3.4
84
91
2
445
21
10
25
42
1.85
24106--24393
127
2.3
126
88
3
427
21
10
25
42
1.85
24106--24393
43
6.8
42
86
4
400
21
10
25
42
1.85
25561--26110
276
2.0
276
98
0
1064
33
20
22
23
1.97

Tables:   1

The End!