Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023593.1 Corchorus olitorius cultivar O-4 contig23626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15479

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--170
35
4.7
35
96
0
278
4
38
43
13
1.65
137--183
24
2.0
23
87
4
67
4
38
44
12
1.62
2635--2694
23
2.6
23
77
15
70
56
11
0
31
1.35
5782--5830
26
1.9
26
87
4
73
55
24
2
18
1.53
6643--6682
20
2.0
20
95
0
71
32
12
20
35
1.90
10914--11079
22
7.7
22
73
15
109
39
7
13
39
1.73
11137--11197
2
32.0
2
74
21
51
54
1
1
42
1.20
11927--11995
32
2.2
32
86
0
93
15
11
34
37
1.84
11935--12009
32
2.4
31
80
6
78
16
12
33
38
1.85
12128--12166
20
2.0
20
84
0
51
35
5
5
53
1.45
12199--12241
16
2.7
16
81
0
50
6
9
27
55
1.57
15107--15150
16
2.8
16
92
0
70
38
40
15
4
1.68
15334--15371
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!