Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023599.1 Corchorus olitorius cultivar O-4 contig23632, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21340

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112--178
32
2.1
32
91
0
107
40
7
19
32
1.79
991--1249
131
2.0
129
87
7
373
37
10
1
50
1.47
1478--1529
15
3.5
15
79
7
52
42
1
1
53
1.23
2768--2794
12
2.2
12
100
0
54
0
0
11
88
0.50
5235--5273
6
6.5
6
100
0
78
33
15
0
51
1.44
5610--6655
22
47.7
22
65
14
127
36
8
16
38
1.80
5779--6545
44
17.7
44
68
13
254
37
8
17
37
1.80
6528--6627
46
2.2
44
85
3
128
37
14
14
35
1.86
8840--9013
22
7.9
21
76
11
152
35
10
18
35
1.85
8841--8967
66
1.9
66
93
3
220
36
11
17
35
1.85
9051--9491
22
19.9
22
70
12
181
38
9
16
34
1.82
9571--10042
44
10.8
44
69
13
205
38
9
15
36
1.80
9571--10041
22
21.6
22
67
11
184
38
9
15
36
1.80
9698--9770
38
1.9
38
88
0
110
36
8
17
36
1.80
10025--10130
22
4.9
22
68
15
67
46
11
10
32
1.74
13371--13405
17
2.1
17
100
0
70
45
5
0
48
1.26
19521--19581
31
2.0
31
96
0
95
36
21
11
31
1.89

Tables:   1

The End!