Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023602.1 Corchorus olitorius cultivar O-4 contig23635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26710

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8089--8222
67
2.0
65
91
2
214
49
10
11
28
1.73
14585--14913
41
7.8
41
80
10
355
39
26
10
23
1.86
14584--14906
167
1.9
167
91
5
528
39
27
9
23
1.85
14585--14913
84
3.9
87
87
8
486
39
26
10
23
1.86
18450--18569
35
3.4
35
87
0
159
26
32
15
25
1.95
18957--19429
72
6.6
72
89
1
707
21
25
20
32
1.97
18949--19603
144
4.4
144
88
6
1008
20
26
19
32
1.97
18957--19603
216
2.9
215
86
5
891
21
26
20
32
1.97
19406--19445
16
2.5
16
95
0
71
17
35
22
25
1.95
19341--19517
88
2.0
88
89
0
273
20
27
19
32
1.97
19422--19603
72
2.5
72
94
0
310
19
29
19
31
1.97
19262--19589
160
2.0
160
94
0
566
21
27
20
31
1.97
20103--20223
59
2.1
59
95
0
215
42
25
9
23
1.83
20773--20810
20
1.9
20
88
0
58
31
18
31
18
1.95
22945--23278
41
7.9
41
82
8
386
38
28
10
23
1.88
22945--23278
84
3.9
85
90
4
523
38
28
10
23
1.88
24683--24825
76
1.9
76
81
5
173
18
28
28
24
1.98
26536--26574
20
1.9
21
89
5
62
61
17
7
12
1.54

Tables:   1

The End!