Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023606.1 Corchorus olitorius cultivar O-4 contig23639, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3027
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27


Found at i:2119 original size:50 final size:50

Alignment explanation


    Indices: 2042--2259  Score: 363
    Period size: 50  Copynumber: 4.4  Consensus size: 50

       2032 GATATACAGA

                                   *                          
       2042 AGAA-TGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AGAATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                                              
       2091 AGAATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT
          1 AGAATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                                               
       2141 AGAATTGAATTGGAAGACTA-TTCAAAGGATAAGCGGAAGACGGTCCTTTT
          1 AGAATTGAATTGGAAGAC-AGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                    *                          
       2191 A-AGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AGA-ATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                
       2241 A-AGATTGAATTGGAAGACA
          1 AGA-ATTGAATTGGAAGACA

       2260 ATTTGAAGAA


Statistics
Matches: 163,  Mismatches: 2, Indels: 7
        0.95            0.01        0.04

Matches are distributed among these distances:
  49    6  0.04
  50  156  0.96
  51    1  0.01

ACGTcount: A:0.36, C:0.11, G:0.28, T:0.24


Consensus pattern (50 bp):   
AGAATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

Done.