Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002361.1 Corchorus olitorius cultivar O-4 contig02361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2298
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33


Found at i:1312 original size:42 final size:43

Alignment explanation


    Indices: 1261--1354  Score: 147
    Period size: 45  Copynumber: 2.2  Consensus size: 43

       1251 AGTGCATTAC

                                                  *    
       1261 CTAA-ATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAAAG
          1 CTAATATTCTACCTCCATCTCTAGGTAATTCATCAAAACAAAG

                                                         
       1302 CTAATATTCTACTCCTCCATCTCTAGGTAATTCATCAAAACAAAG
          1 CTAATATTCTA--CCTCCATCTCTAGGTAATTCATCAAAACAAAG

                    
       1347 CTAATATT
          1 CTAATATT

       1355 AATTGTTGCT


Statistics
Matches: 48,  Mismatches: 1, Indels: 4
        0.91            0.02        0.08

Matches are distributed among these distances:
  41    4  0.08
  42    6  0.12
  45   38  0.79

ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33


Consensus pattern (43 bp):   
CTAATATTCTACCTCCATCTCTAGGTAATTCATCAAAACAAAG
Done.