Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023610.1 Corchorus olitorius cultivar O-4 contig23643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2500
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:2238 original size:16 final size:17

Alignment explanation


    Indices: 2217--2248  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       2207 GAAATTGCGT

                             
       2217 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                            
       2233 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

       2249 AATTTGCACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC
Done.