Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023615.1 Corchorus olitorius cultivar O-4 contig23648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28081

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1119--1652
87
6.2
86
85
6
717
19
27
17
35
1.94
1255--1706
40
10.8
40
74
10
305
19
26
18
35
1.95
3551--3592
21
2.0
21
100
0
84
28
4
19
47
1.69
4121--4217
28
3.5
28
97
0
185
31
15
10
42
1.81
8623--8679
14
4.3
13
80
10
62
43
8
10
36
1.70
9370--9439
7
10.4
7
80
9
67
78
5
1
14
1.00
9369--9435
14
5.0
14
89
5
95
79
4
1
14
0.97
9369--9451
28
3.1
27
75
14
75
78
6
2
13
1.04
9943--9982
20
2.0
20
95
0
71
35
12
10
42
1.76
24801--24875
38
2.0
38
97
0
141
44
24
12
20
1.85
25407--25449
23
1.9
23
81
13
54
41
13
34
9
1.77
27821--27858
20
1.9
20
100
0
76
36
15
34
13
1.87

Tables:   1

The End!