Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002363.1 Corchorus olitorius cultivar O-4 contig02363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30


Found at i:90 original size:50 final size:51

Alignment explanation


    Indices: 8--115  Score: 139
    Period size: 51  Copynumber: 2.1  Consensus size: 51

          1 TTCACTT

                   *            *                   * *        
          8 ACAAATTTCTTAAAAGCTCACTCTTTTAATT-AAAGATCCTATCTTTATTC
          1 ACAAATTGCTTAAAAGCTCAATCTTTTAATTAAAAGATCCAACCTTTATTC

                                        *       *               
         58 ACAAATTGCTTAAAAGCTACAATC-TTTGATTAAAATATCCAACCTTTATTC
          1 ACAAATTGCTTAAAAGCT-CAATCTTTTAATTAAAAGATCCAACCTTTATTC

                   
        109 ACAAATT
          1 ACAAATT

        116 TCTCAAAGTT


Statistics
Matches: 50,  Mismatches: 6, Indels: 3
        0.85            0.10        0.05

Matches are distributed among these distances:
  50   23  0.46
  51   27  0.54

ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38


Consensus pattern (51 bp):   
ACAAATTGCTTAAAAGCTCAATCTTTTAATTAAAAGATCCAACCTTTATTC

Done.