Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023630.1 Corchorus olitorius cultivar O-4 contig23663, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40218

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464--558
41
2.3
41
79
0
109
45
12
16
25
1.83
7910--7940
15
2.1
15
93
0
53
54
0
3
41
1.16
10707--10766
27
2.3
26
88
2
84
11
36
38
13
1.81
17633--17665
6
5.7
6
92
7
50
18
51
9
21
1.73
19416--19490
36
2.1
36
100
0
150
22
29
5
42
1.75
23206--23252
26
1.9
24
87
12
69
27
27
4
40
1.75
24187--24218
15
2.1
15
100
0
64
50
28
6
15
1.68
24805--24885
33
2.5
33
85
4
101
24
6
24
44
1.76
24796--24900
33
3.2
33
76
10
99
26
5
21
45
1.74
27992--28027
16
2.3
15
90
4
54
16
0
0
83
0.65
29264--29310
21
2.2
21
84
0
58
10
29
36
23
1.89
32364--32396
6
5.5
6
92
0
57
81
0
3
15
0.80
32364--32400
18
2.1
17
95
5
65
78
0
5
16
0.93
35900--35970
21
3.4
21
96
0
133
29
18
26
25
1.98
36894--36958
32
2.0
32
84
0
85
21
20
20
38
1.94
39464--39505
15
2.7
15
92
3
66
11
9
14
64
1.50

Tables:   1

The End!