Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023632.1 Corchorus olitorius cultivar O-4 contig23665, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3661
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:1516 original size:101 final size:101

Alignment explanation


    Indices: 1396--1598  Score: 406
    Period size: 101  Copynumber: 2.0  Consensus size: 101

       1386 TTTTTGAAAA

                                                                             
       1396 TGCTTTTATTATCTCTTTTATCCTTCTTCTTTTTTGATTTTGATCTTTTCTATCTCTATATCGAT
          1 TGCTTTTATTATCTCTTTTATCCTTCTTCTTTTTTGATTTTGATCTTTTCTATCTCTATATCGAT

                                                
       1461 GCATGTATGCAAATGATGAATGCAAAGTCTGGTTAT
         66 GCATGTATGCAAATGATGAATGCAAAGTCTGGTTAT

                                                                             
       1497 TGCTTTTATTATCTCTTTTATCCTTCTTCTTTTTTGATTTTGATCTTTTCTATCTCTATATCGAT
          1 TGCTTTTATTATCTCTTTTATCCTTCTTCTTTTTTGATTTTGATCTTTTCTATCTCTATATCGAT

                                                
       1562 GCATGTATGCAAATGATGAATGCAAAGTCTGGTTAT
         66 GCATGTATGCAAATGATGAATGCAAAGTCTGGTTAT

             
       1598 T
          1 T

       1599 TAAGTTAAGT


Statistics
Matches: 102,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 101  102  1.00

ACGTcount: A:0.21, C:0.16, G:0.13, T:0.51


Consensus pattern (101 bp):   
TGCTTTTATTATCTCTTTTATCCTTCTTCTTTTTTGATTTTGATCTTTTCTATCTCTATATCGAT
GCATGTATGCAAATGATGAATGCAAAGTCTGGTTAT
Done.