genome.fa.s23636.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023636.1 Corchorus olitorius cultivar O-4 contig23669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53529

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5877--5926	15	3.5	15	78	15	61	40	8	12	40	1.72
5877--5935	14	4.3	13	83	10	57	38	6	13	40	1.71
5885--5935	26	1.9	27	88	11	79	41	5	13	39	1.69
6573--6598	10	2.6	10	100	0	52	92	0	7	0	0.39
6654--6833	100	1.8	100	84	4	247	32	17	32	17	1.93
8908--9067	67	2.4	67	90	3	250	35	13	23	28	1.92
9071--9423	64	5.5	64	91	0	499	33	15	24	26	1.95
9508--9677	50	3.4	50	90	0	250	38	10	26	25	1.87
9561--9641	23	3.3	23	66	12	63	37	11	30	20	1.88
9654--9738	27	3.2	27	72	9	84	40	10	24	24	1.87
11292--11319	14	2.0	14	100	0	56	28	35	14	21	1.92
14461--14568	35	2.9	34	75	20	117	39	15	14	29	1.88
15444--15529	39	2.2	40	81	10	97	55	25	8	10	1.61
17775--17875	43	2.4	42	81	5	130	36	5	29	27	1.81
18427--18564	65	2.1	66	82	4	163	38	15	25	21	1.92
18567--19363	39	20.6	39	91	2	1223	31	17	18	31	1.94
27668--27707	11	3.7	11	90	3	64	10	7	0	82	0.84
29537--29749	4	54.0	4	65	14	50	26	9	0	62	1.30
29529--29593	27	2.4	27	82	10	71	27	4	1	66	1.20
29538--29649	47	2.4	47	89	2	174	29	8	0	61	1.30
29608--29728	64	2.0	63	80	11	144	27	12	0	59	1.39
29663--29716	27	2.0	28	88	3	83	27	14	0	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31264--31364	43	2.4	42	81	5	130	36	5	29	27	1.81
33339--33436	31	3.3	30	84	4	126	53	9	14	23	1.69
34365--34443	27	2.9	27	94	0	140	20	18	41	18	1.90
36257--36299	2	21.5	2	95	0	77	48	0	2	48	1.14
36744--36885	74	2.0	68	88	9	205	40	20	9	29	1.83
38035--38357	157	2.1	157	91	0	520	26	23	24	25	2.00
47480--47515	2	18.0	2	94	0	63	52	47	0	0	1.00
51853--52051	51	3.9	51	91	0	319	26	25	10	37	1.88
52272--52889	64	9.6	64	82	3	695	25	22	16	35	1.95
52272--52891	129	4.8	127	81	6	685	25	22	16	35	1.95
52272--52892	257	2.4	258	83	4	752	25	22	16	35	1.95
52280--52889	193	3.2	192	81	4	733	25	22	16	35	1.95

Tables:   1

The End!