Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023637.1 Corchorus olitorius cultivar O-4 contig23670, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3752
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:959 original size:13 final size:13

Alignment explanation


    Indices: 941--966  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        931 TTTTTATTCA

                         
        941 CTTTGATTTGAAT
          1 CTTTGATTTGAAT

                         
        954 CTTTGATTTGAAT
          1 CTTTGATTTGAAT

        967 TATTTAACGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54


Consensus pattern (13 bp):   
CTTTGATTTGAAT

Found at i:1295 original size:15 final size:14

Alignment explanation


    Indices: 1259--1297  Score: 51
    Period size: 14  Copynumber: 2.7  Consensus size: 14

       1249 ACCCAAAACC

                          
       1259 TTTTGAAAACCTAT
          1 TTTTGAAAACCTAT

                    *   * 
       1273 TTTTGAAAGCCTTT
          1 TTTTGAAAACCTAT

                       
       1287 TTCTTGAAAAC
          1 TT-TTGAAAAC

       1298 AATTTCCTTG


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  14   14  0.67
  15    7  0.33

ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44


Consensus pattern (14 bp):   
TTTTGAAAACCTAT
Done.