Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023641.1 Corchorus olitorius cultivar O-4 contig23674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93122

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7391--7555
29
5.7
28
84
2
186
41
25
16
16
1.89
7391--7557
58
2.9
57
83
3
217
40
25
17
16
1.90
7391--7585
87
2.2
87
84
8
238
42
25
16
16
1.88
7420--7589
29
5.8
30
84
6
151
41
25
17
15
1.88
10371--10550
71
2.5
71
82
3
211
30
16
27
25
1.97
15852--15892
21
1.9
22
85
5
57
39
14
29
17
1.89
20748--20774
4
6.8
4
100
0
54
51
0
0
48
1.00
27864--27911
25
1.9
25
91
8
80
52
8
10
29
1.65
31666--31705
16
2.4
17
87
12
64
40
15
5
40
1.68
38521--38566
21
2.2
21
88
0
65
30
15
23
30
1.95
38530--38570
21
2.0
21
100
0
82
29
12
24
34
1.91
40385--40444
30
2.0
30
100
0
120
23
33
10
33
1.88
43664--43709
23
2.0
22
95
4
83
13
32
15
39
1.85
50821--50856
19
1.9
18
88
5
54
33
22
2
41
1.68
56091--56134
21
2.2
20
83
4
52
9
27
40
22
1.84
68807--68857
19
2.7
19
77
14
61
50
1
0
47
1.12
69212--69237
13
2.0
13
100
0
52
53
30
0
15
1.42
70762--70812
22
2.3
22
83
6
59
41
9
9
39
1.71
82107--82157
19
2.7
19
71
14
52
52
1
0
45
1.12
83465--83523
24
2.5
24
100
0
118
11
37
38
11
1.79
84696--84729
2
17.5
2
93
6
61
50
0
0
50
1.00
86556--86846
144
2.0
151
88
5
443
39
9
9
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86762--86979
109
2.0
109
91
0
355
42
13
11
32
1.80
88688--88721
12
2.9
12
86
4
52
88
11
0
0
0.52
88688--88745
24
2.5
24
82
2
64
79
15
1
3
0.95
93079--93111
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!