Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023642.1 Corchorus olitorius cultivar O-4 contig23675, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6851
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:3790 original size:26 final size:25

Alignment explanation


    Indices: 3748--3796  Score: 71
    Period size: 26  Copynumber: 1.9  Consensus size: 25

       3738 TGTCCCTCTG

                        *            
       3748 AAAAAAAAAGAGCGTTAGTAACCTC
          1 AAAAAAAAAGAGAGTTAGTAACCTC

                       *            
       3773 AAAAGAAAAAGGGAGTTAGTAACC
          1 AAAA-AAAAAGAGAGTTAGTAACC

       3797 CCTAAATCAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  25    4  0.19
  26   17  0.81

ACGTcount: A:0.53, C:0.12, G:0.20, T:0.14


Consensus pattern (25 bp):   
AAAAAAAAAGAGAGTTAGTAACCTC
Done.