Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023643.1 Corchorus olitorius cultivar O-4 contig23676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27844

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110--223
57
2.0
56
93
1
192
31
24
1
42
1.65
1861--1895
11
3.2
11
91
0
61
80
17
2
0
0.84
1865--1924
16
3.8
16
72
24
54
73
18
6
1
1.14
4182--4303
61
2.0
61
90
0
190
36
26
0
36
1.62
4640--4676
4
9.2
4
87
0
56
24
0
5
70
1.08
4730--4774
18
2.5
19
82
10
58
31
0
13
55
1.38
5973--6027
22
2.5
22
100
0
110
16
32
23
27
1.96
6013--6173
69
2.3
70
89
1
243
27
22
29
20
1.99
8413--8511
49
2.0
49
86
3
137
23
9
9
58
1.57
12096--12164
32
2.2
32
89
2
104
18
42
28
10
1.83
14282--14442
43
3.8
41
82
8
207
22
9
26
41
1.85
14282--14442
84
1.9
84
92
2
270
22
9
26
41
1.85
26744--26777
12
2.8
12
91
8
52
5
0
26
67
1.13

Tables:   1

The End!