Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023644.1 Corchorus olitorius cultivar O-4 contig23677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2502
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:1531 original size:15 final size:15

Alignment explanation


    Indices: 1501--1542  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1491 TTACTTTGCT

                            
       1501 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
       1517 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

                       
       1532 TTGTTTTCTGT
          1 TTGTTTTCTGT

       1543 CAACCTCTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.12, C:0.07, G:0.14, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA

Found at i:2293 original size:30 final size:30

Alignment explanation


    Indices: 2239--2295  Score: 78
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       2229 AACTTACCCA

                     *    *               
       2239 TTTAATTTCCAAAATCTCCTTTTGGGAACC
          1 TTTAATTTCAAAAACCTCCTTTTGGGAACC

                *            *         
       2269 TTTATTTTCAAAAACCTTCTTTTGGGA
          1 TTTAATTTCAAAAACCTCCTTTTGGGA

       2296 TTATCCAAAC


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   23  1.00

ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44


Consensus pattern (30 bp):   
TTTAATTTCAAAAACCTCCTTTTGGGAACC
Done.