Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023650.1 Corchorus olitorius cultivar O-4 contig23683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43122

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
258--291
2
17.0
2
100
0
68
50
0
0
50
1.00
435--1352
478
1.9
482
92
3
1555
44
11
8
36
1.70
3026--3059
2
17.0
2
93
0
59
50
2
0
47
1.16
6614--6711
36
2.7
37
82
6
119
34
15
17
32
1.91
7894--7938
22
2.0
23
83
12
58
28
4
13
53
1.59
9202--9248
20
2.3
21
79
17
55
55
14
4
25
1.58
9999--10842
48
17.8
48
81
4
962
12
21
20
45
1.84
10711--10798
40
2.2
40
89
0
131
11
23
20
44
1.84
10666--10851
88
2.1
87
80
6
205
12
24
17
45
1.83
13217--13561
52
6.6
52
85
3
424
40
14
15
29
1.88
20094--20153
6
10.2
6
78
10
52
21
28
26
23
1.99
20094--20147
12
4.6
12
80
13
67
22
29
25
22
1.99
21639--21668
2
15.5
2
93
6
53
53
0
0
46
1.00
24382--24453
19
3.8
18
78
14
74
29
2
9
58
1.44
25403--25489
45
1.9
45
88
0
129
35
4
20
39
1.73
35953--36000
11
4.7
11
77
12
50
31
20
6
41
1.77
37932--37956
13
1.9
13
100
0
50
40
8
12
40
1.72
42502--42548
23
2.0
24
84
12
62
10
4
23
61
1.46

Tables:   1

The End!